Davuluri, Ramana: search on Z-Library

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1

Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their expression profiles

Nakagawa, Hidewaki, Liyanarachchi, Sandya, Davuluri, Ramana V, Auer, Herbert, Martin, Edward W, de la Chapelle, Albert, Frankel, Wendy L

Journal:

Year:

2004

Language:

english

File:

PDF, 404 KB

english, 2004

2

Biomedical Informatics for Cancer Research || Data Management, Databases, and Warehousing

Ochs, Michael F., Casagrande, John T., Davuluri, Ramana V.

Year:

2010

Language:

english

File:

PDF, 789 KB

english, 2010

3

The functional consequences of alternative promoter use in mammalian genomes

Ramana V. Davuluri, Yutaka Suzuki, Sumio Sugano, Christoph Plass, Tim H.-M. Huang

Journal:

Trends in Genetics

Year:

2008

Language:

english

File:

PDF, 617 KB

english, 2008

4

ADAR1 Forms a Complex with Dicer to Promote MicroRNA Processing and RNA-Induced Gene Silencing

Ota, Hiromitsu, Sakurai, Masayuki, Gupta, Ravi, Valente, Louis, Wulff, Bjorn-Erik, Ariyoshi, Kentaro, Iizasa, Hisashi, Davuluri, Ramana V., Nishikura, Kazuko

Journal:

Year:

2013

Language:

english

File:

PDF, 1.88 MB

english, 2013

5

Regulation of microRNA Expression: the Hypoxic Component

Kulshreshtha, Ritu, Ferracin, Manuela, Negrini, Massimo, Calin, George A., Davuluri, Ramana V., Ivan, Mircea

Journal:

Year:

2007

Language:

english

File:

PDF, 637 KB

english, 2007

6

Radiomic MRI signature reveals three distinct subtypes of glioblastoma with different clinical and molecular characteristics, offering prognostic value beyond IDH1

Rathore, Saima, Akbari, Hamed, Rozycki, Martin, Abdullah, Kalil G., Nasrallah, MacLean P., Binder, Zev A., Davuluri, Ramana V., Lustig, Robert A., Dahmane, Nadia, Bilello, Michel, O’Rourke, Donald M.,

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 5.29 MB

english, 2018

7

TMOD-11. A NOVEL ANIMAL MODEL OF MEDULLOBLASTOMA METASTASIS

Xiang, Chaomei, Baubet, Valérie, Bi, Yingtao, Zhang, Logan, Pal, Sharmistha, O’Rourke, Donald, Martinez-Lage, Maria, Davuluri, Ramana, Dahmane, Nadia

Journal:

Year:

2017

File:

PDF, 87 KB

2017

8

PML Is a Direct p53 Target that Modulates p53 Effector Functions

Elisa de Stanchina, Emmanuelle Querido, Masako Narita, Ramana V Davuluri, Pier Paolo Pandolfi, Gerardo Ferbeyre, Scott W Lowe

Journal:

Year:

2004

Language:

english

File:

PDF, 546 KB

english, 2004

9

Biomedical Informatics for Cancer Research || Clinical Research Systems and Integration with Medical Systems

Ochs, Michael F., Casagrande, John T., Davuluri, Ramana V.

Year:

2010

Language:

english

File:

PDF, 341 KB

english, 2010

10

Correction for Patro et al., Shift in Monocyte Apoptosis with Increasing Viral Load and Change in Apoptosis-Related ISG/Bcl2 Family Gene Expression in Chronically HIV-1-Infected Subjects

Patro, Sean C., Pal, Sharmistha, Bi, Yingtao, Lynn, Kenneth, Mounzer, Karam C., Kostman, Jay R., Davuluri, Ramana V., Montaner, Luis J.

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 94 KB

english, 2015

11

[ACM Press the 6th ACM Conference - Atlanta, Georgia (2015.09.09-2015.09.12)] Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics - BCB '15 - Identification of candidate regulatory SNPs by integrative analysis for prostate cancer genome data

Jung, Segun, Jin, Hongjian, Davuluri, Ramana V

Year:

2015

Language:

english

File:

PDF, 343 KB

english, 2015

12

Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array

Gregory AC Singer, Jiejun Wu, Pearlly Yan, Christoph Plass, Tim HM Huang, Ramana V Davuluri

Journal:

Year:

2008

Language:

english

File:

PDF, 386 KB

english, 2008

13

MicroRNAs, ultraconserved genes and colorectal cancers

Simona Rossi, Scott Kopetz, Ramana Davuluri, Stanley R. Hamilton, George A. Calin

Journal:

The International Journal of Biochemistry & Cell Biology

Year:

2010

Language:

english

File:

PDF, 528 KB

english, 2010

14

Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs

Victor X Jin, Gregory AC Singer, Francisco J Agosto-Pérez, Sandya Liyanarachchi, Ramana V Davuluri

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 365 KB

english, 2006

15

Aberrant DNA Methylation of OLIG1, a Novel Prognostic Factor in Non-Small Cell Lung Cancer

Brena, Romulo M., Morrison, Carl, Liyanarachchi, Sandya, Jarjoura, David, Davuluri, Ramana V., Otterson, Gregory A., Reisman, David, Glaros, Selina, Rush, Laura J., Plass, Christoph

Journal:

Year:

2007

Language:

english

File:

PDF, 1.22 MB

english, 2007

16

Alternative transcription and alternative splicing in cancer

Sharmistha Pal, Ravi Gupta, Ramana V. Davuluri

Journal:

Pharmacology & Therapeutics

Year:

2012

Language:

english

File:

PDF, 836 KB

english, 2012

17

CpG Island Methylation in a Mouse Model of Lymphoma Is Driven by the Genetic Configuration of Tumor Cells

Opavsky, Rene, Wang, Shu-Huei, Trikha, Prashant, Raval, Aparna, Huang, Yuan, Wu, Yue-Zhong, Rodriguez, Benjamin, Keller, Benjamin, Liyanarachchi, Sandya, Wei, Guo, Davuluri, Ramana V., Weinstein, Mich

Journal:

Year:

2007

Language:

english

File:

PDF, 1.02 MB

english, 2007

18

[ACM Press the First ACM International Conference - Niagara Falls, New York (2010.08.02-2010.08.04)] Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10 - Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets

Kim, Hyunsoo, Davuluri, Ramana V.

Year:

2010

Language:

english

File:

PDF, 580 KB

english, 2010

19

In silico analysis of alternative splicing on drug-target gene interactions

Ji, Yanrong, Mishra, Rama K., Davuluri, Ramana V.

Journal:

Scientific Reports

Year:

2020

Language:

english

File:

PDF, 4.95 MB

english, 2020

20

Identification of a novel noncoding RNA gene, NAMA, that is downregulated in papillary thyroid carcinoma with BRAF mutation and associated with growth arrest

Heejei Yoon, Huiling He, Rebecca Nagy, Ramana Davuluri, Saul Suster, Daniel Schoenberg, Natalia Pellegata, Albert de la Chapelle

Journal:

International Journal of Cancer

Year:

2007

Language:

english

File:

PDF, 793 KB

english, 2007

21

AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsiscis-regulatory elements and transcription factors

Ramana V Davuluri, Hao Sun, Saranyan K Palaniswamy, Nicole Matthews, Carlos Molina, Mike Kurtz, Erich Grotewold

Journal:

BMC Bioinformatics

Year:

2003

Language:

english

File:

PDF, 574 KB

english, 2003

22

Shift in Monocyte Apoptosis with Increasing Viral Load and Change in Apoptosis-Related ISG/Bcl2 Family Gene Expression in Chronically HIV-1-Infected Subjects

Patro, Sean C., Pal, Sharmistha, Bi, Yingtao, Lynn, Kenneth, Mounzer, Karam C., Kostman, Jay R., Davuluri, Ramana V., Montaner, Luis J., Silvestri, G.

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 3.51 MB

english, 2015

23

A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection

Deng, Zhong, Wang, Zhuo, Stong, Nick, Plasschaert, Robert, Moczan, Aliah, Chen, Horng-Shen, Hu, Sufeng, Wikramasinghe, Priyankara, Davuluri, Ramana V, Bartolomei, Marisa S, Riethman, Harold, Lieberman

Journal:

The EMBO Journal

Year:

2012

Language:

english

File:

PDF, 2.73 MB

english, 2012

24

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis

Han, Junghee, Potter, Dustin, Kurc, Tahsin, Singer, Greg, Yan, Pearlly S., Hao, Sun, Hastings, Shannon, Langella, Stephen, Oster, Scott, Davuluri, Ramana V., Huang, Tim H.-M., Saltz, Joel H.

Journal:

Cancer Informatics

Year:

2008

File:

PDF, 650 KB

2008

25

FTO-Dependent N6-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Huang, Hao, Wang, Yinu, Kandpal, Manoj, Zhao, Guangyuan, Cardenas, Horacio, Ji, Yanrong, Chaparala, Anusha, Tanner, Edward J., Chen, Jianjun, Davuluri, Ramana V., Matei, Daniela

Journal:

Cancer Research

Year:

2020

File:

PDF, 6.59 MB

2020

26

A Founding Locus within the RET Proto-Oncogene May Account for a Large Proportion of Apparently Sporadic Hirschsprung Disease and a Subset of Cases of Sporadic Medullary Thyroid Carcinoma

Salud Borrego, Fred A. Wright, Raquel M. Fernández, Nita Williams, Manuel López-Alonso, Ramana Davuluri, Guillermo Antiñolo, Charis Eng

Journal:

The American Journal of Human Genetics

Year:

2003

Language:

english

File:

PDF, 675 KB

english, 2003

27

Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms

Dapas, Matthew, Kandpal, Manoj, Bi, Yingtao, Davuluri, Ramana V.

Journal:

Briefings in Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

28

Combinatorial Analysis of Transcription Factor Partners Reveals Recruitment of c-MYC to Estrogen Receptor-α Responsive Promoters

Alfred S.L. Cheng, Victor X. Jin, Meiyun Fan, Laura T. Smith, Sandya Liyanarachchi, Pearlly S. Yan, Yu-Wei Leu, Michael W.Y. Chan, Christoph Plass, Kenneth P. Nephew, Ramana V. Davuluri, Tim H.-M. Hua

Journal:

Year:

2006

Language:

english

File:

PDF, 711 KB

english, 2006

29

NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data

Bi, Yingtao, Davuluri, Ramana V

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 464 KB

english, 2013

30

[IEEE 2010 IEEE International Conference on BioInformatics and BioEngineering - Philadelphia, PA, USA (2010.05.31-2010.06.3)] 2010 IEEE International Conference on BioInformatics and BioEngineering - Estimating the Expression of Transcript Isoforms from mRNA-Seq via Nonnegative Least Squares

Kim, Hyunsoo, Bi, Yingtao, Davuluri, Ramana V.

Year:

2010

Language:

english

File:

PDF, 240 KB

english, 2010

31

Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data

Ravi Gupta, Priyankara Wikramasinghe, Anirban Bhattacharyya, Francisco A Perez, Sharmistha Pal, Ramana V Davuluri

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 904 KB

english, 2010

32

Evaluation of data discretization methods to derive platform independent isoform expression signatures for multi-class tumor subtyping

Jung, Segun, Bi, Yingtao, Davuluri, Ramana V

Journal:

Year:

2015

Language:

english

File:

PDF, 2.34 MB

english, 2015

33

Identification of Genetic and Epigenetic Variants Associated with Breast Cancer Prognosis by Integrative Bioinformatics Analysis

Shilpi, Arunima, Bi, Yingtao, Jung, Segun, Patra, Samir K., Davuluri, Ramana V.

Journal:

Cancer Informatics

Year:

2017

Language:

english

File:

PDF, 1.59 MB

english, 2017

34

IDH3α regulates one-carbon metabolism in glioblastoma

May, Jasmine L., Kouri, Fotini M., Hurley, Lisa A., Liu, Juan, Tommasini-Ghelfi, Serena, Ji, Yanrong, Gao, Peng, Calvert, Andrea E., Lee, Andrew, Chandel, Navdeep S., Davuluri, Ramana V., Horbinski, C

Journal:

Science Advances

Year:

2019

Language:

english

File:

PDF, 1.29 MB

english, 2019

35

10.1038/ng780

Davuluri, Ramana V., Grosse, Ivo, Zhang, Michael Q.

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 116 KB

english, 2001

36

Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques

Macyszyn, Luke, Akbari, Hamed, Pisapia, Jared M., Da, Xiao, Attiah, Mark, Pigrish, Vadim, Bi, Yingtao, Pal, Sharmistha, Davuluri, Ramana V., Roccograndi, Laura, Dahmane, Nadia, Martinez-Lage, Maria, B

Journal:

Year:

2015

Language:

english

File:

PDF, 399 KB

english, 2015

37

Sequencing and analysis of a South Asian-Indian personal genome

Gupta, Ravi, Ratan, Aakrosh, Rajesh, Changanamkandath, Chen, Rong, Kim, Hie Lim, Burhans, Richard, Miller, Webb, Santhosh, Sam, Davuluri, Ramana V, Butte, Atul J, Schuster, Stephan C, Seshagiri, Somas

Journal:

Year:

2012

Language:

english

File:

PDF, 908 KB

english, 2012

38

Frizzled-7 Identifies Platinum Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Wang, Yinu, Zhao, Guangyuan, Condello, Salvatore, Huang, Hao, Cardenas, Horacio, Tanner, Edward J., Wei, Jianjun, Ji, Yanrong, Li, Junjie, Tan, Yuying, Davuluri, Ramana V., Peter, Marcus E., Cheng, Ji

Journal:

Cancer Research

Year:

2020

File:

PDF, 4.17 MB

2020

39

Genetic Predisposition to Papillary Thyroid Carcinoma: Involvement of FOXE1 , TSHR , and a Novel lincRNA Gene, PTCSC2

He, Huiling, Li, Wei, Liyanarachchi, Sandya, Jendrzejewski, Jaroslaw, Srinivas, Mukund, Davuluri, Ramana V., Nagy, Rebecca, de la Chapelle, Albert

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2015

Language:

english

File:

PDF, 873 KB

english, 2015

40

Aberrant Transforming Growth Factor β1 Signaling and SMAD4 Nuclear Translocation Confer Epigenetic Repression of ADAM19 in Ovarian Cancer

Chan, Michael W.Y., Huang, Yi-Wen, Hartman-Frey, Corinna, Kuo, Chieh-Ti, Deatherage, Daniel, Qin, Huaxia, Cheng, Alfred S.L., Yan, Pearlly S., Davuluri, Ramana V., Huang, Tim H.-M., Nephew, Kenneth P.

Journal:

Year:

2008

Language:

english

File:

PDF, 954 KB

english, 2008

41

[IEEE 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Miami, FL, USA (2014.6.2-2014.6.4)] 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier

Jung, Segun, Bi, Yingtao, Davuluri, Ramana V.

Year:

2014

Language:

english

File:

PDF, 199 KB

english, 2014

42

AGRIS and AtRegNet. A Platform to Link cis-Regulatory Elements and Transcription Factors into Regulatory Networks

Saranyan K. Palaniswamy, Stephen James, Hao Sun, Rebecca S. Lamb, Ramana V. Davuluri and Erich Grotewold

Journal:

PLANT PHYSIOLOGY

Year:

2006

Language:

english

File:

PDF, 3.25 MB

english, 2006

43

Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes

Liu, Xianpeng, Zhao, Bo, Sun, Limin, Bhuripanyo, Karan, Wang, Yiyang, Bi, Yingtao, Davuluri, Ramana V., Duong, Duc M., Nanavati, Dhaval, Yin, Jun, Kiyokawa, Hiroaki

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 2.27 MB

english, 2017

44

Multivariate Analysis of Preoperative Magnetic Resonance Imaging Reveals Transcriptomic Classification of de novo Glioblastoma Patients

Rathore, Saima, Akbari, Hamed, Bakas, Spyridon, Pisapia, Jared M., Shukla, Gaurav, Rudie, Jeffrey D., Da, Xiao, Davuluri, Ramana V., Dahmane, Nadia, O'Rourke, Donald M., Davatzikos, Christos

Journal:

Frontiers in Computational Neuroscience

Year:

2019

File:

PDF, 1.20 MB

2019

45

Direct coupling of the cell cycle and cell death machinery by E2F

Nahle, Zaher, Polakoff, Julia, Davuluri, Ramana V., McCurrach, Mila E., Jacobson, Matthew D., Narita, Masashi, Zhang, Michael Q., Lazebnik, Yuri, Bar-Sagi, Dafna, Lowe, Scott W.

Journal:

Nature Cell Biology

Year:

2002

Language:

english

File:

PDF, 380 KB

english, 2002

46

Genomic structure and alternative splicing of murine R2B receptor protein tyrosine phosphatases (PTPκ, μ, ρ and PCP-2)

Julie Besco, Magdalena C Popesco, Ramana V Davuluri, Adrienne Frostholm, Andrej Rotter

Journal:

Year:

2004

Language:

english

File:

PDF, 2.28 MB

english, 2004

47

Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development

Pal, Sharmistha, Gupta, Ravi, Kim, Hyunsoo, Wickramasinghe, Priyankara, Baubet, Valérie, Showe, Louise C., Dahmane, Nadia, Davuluri, Ramana V.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 1.50 MB

english, 2011

48

A NotI–EcoRV promoter library for studies of genetic and epigenetic alterations in mouse models of human malignancies

Li Yu, Chunhui Liu, Kristi Bennett, Yue-Zhong Wu, Zunyan Dai, Jeff Vandeusen, Rene Opavsky, Aparna Raval, Prashant Trikha, Ben Rodriguez, Brian Becknell, Charlene Mao, Stephen Lee, Ramana V. Davuluri,

Journal:

Year:

2004

Language:

english

File:

PDF, 546 KB

english, 2004

49

[IEEE 2008 IEEE International Conference on Bioinformatics and Biomeidcine Workshops, BIBMW - Philadelphia, PA, USA (2008.11.3-2008.11.5)] 2008 IEEE International Conference on Bioinformatics and Biomeidcine Workshops - In silico prediction of target SNPs affecting miR-mRNA interaction

Sun, Hao, Nicoloso, Milena S., Bhattacharyya, Anirban, Calin, George A., Davuluri, Ramana V.

Year:

2008

Language:

english

File:

PDF, 81 KB

english, 2008

50

[IEEE 2009 Ohio Collaborative Conference on Bioinformatics (OCCBIO) - Cleveland, Ohio, USA (2009.06.15-2009.06.17)] 2009 Ohio Collaborative Conference on Bioinformatics - Discovery of Regulatory Networks in Plants by Linking Promoter and Transcription Factor Databases

Yilmaz, Alper, Davuluri, Ramana, Palaniswamy, Saranyan, Grotewold, Erich

Year:

2009

Language:

english

File:

PDF, 313 KB

english, 2009

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